PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913397.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 560aa    MW: 59234.8 Da    PI: 7.8941
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913397.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-09169193226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tC +G++CkF H+
  XP_010913397.1 169 GEKDCAHYMLTRTCTFGNSCKFDHP 193
                     7889********************8 PP

2zf-CCCH39.87.4e-13239263327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++lC+f+a+tG Ck+G++CkF+H++
  XP_010913397.1 239 EPLCSFYAKTGKCKFGPNCKFHHPK 263
                     79*********************96 PP

3zf-CCCH37.83.1e-12317342126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+++H+
  XP_010913397.1 317 PGEADCPFYLKTGSCKYGATCRYNHP 342
                     57899********************9 PP

4zf-CCCH31.72.7e-10457476726
                     SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHg 26 
                     +++++tG Ck+G+rCkF+H+
  XP_010913397.1 457 HYYMKTGLCKFGERCKFHHP 476
                     59*****************8 PP

5zf-CCCH38.91.5e-12508531427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C+f+++tGtCk+G +CkF H+p
  XP_010913397.1 508 VICSFYLKTGTCKFGTTCKFDHPP 531
                     68********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.699167195IPR000571Zinc finger, CCCH-type
SMARTSM003560.018167194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5168194IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7169193IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-7236263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69236264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6239264IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10239263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-7241268IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432316344IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-10318342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5320343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4322341IPR000571Zinc finger, CCCH-type
SMARTSM003560.43454477IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7457476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5457479IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.652457478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4458476IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7504531IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601504532IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5508531IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9508531IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5509529IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSNQIYNYSS SYGGGGGTSS FYSLRATNPY LSDGGSSRLS SVDSLAAADT GMYSDRMSSL  60
YSKSGDGSLR LSGSDIAGYG AAGSLSAAGK IGGGIGTAPA SRALFASSSL DPMVVGGAKR  120
SVEALYNQSI LGSHNTIGQS DAPFSSNSLV KRSRLETASN LPIYPQRPGE KDCAHYMLTR  180
TCTFGNSCKF DHPIWVPEGG IPDWKEIPLV PASESLPEKP GEPDCPGTEN SVLPERPSEP  240
LCSFYAKTGK CKFGPNCKFH HPKDLKIPPD GEDTDKMGEM ESEKNDGSAG GDPKLAKAHV  300
SITPALLHNS KGLPIRPGEA DCPFYLKTGS CKYGATCRYN HPDRNSFNPP LASALGQAIM  360
PSPATNLPFG VLDPAASFLQ NINLQSAQAS LGVIPTVYPQ RPGEIECDVR IDSILFVLGL  420
LTASRAHLTL GPITRVAKNA SLYTVSLSLM LASFYSHYYM KTGLCKFGER CKFHHPIDRS  480
APMSDAKQAP QQNVKLTLAG LPRREGAVIC SFYLKTGTCK FGTTCKFDHP PPGEAIAMAT  540
SQGTGSGTGT GVFSTESGEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913397.10.0PREDICTED: zinc finger CCCH domain-containing protein 8-like isoform X2
SwissprotQ941Q31e-160C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7T0Z40.0D7T0Z4_VITVI; Putative uncharacterized protein
STRINGVIT_19s0085g01180.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-146floral homeotic protein (HUA1)